Journal Articles - 14 |
2021 |
| Ainsworth, C., Chassignet, E., French-McCay, D., Beegle-Krause, C., Berenshtein, I., Englehardt, J., Fiddaman, T., Huang, H., Huettel, M., Justic, D., Kourafalou, V., Liu, Y., Mauritzen, C., Murawski, S., Morey, S., Özgökmen, T., Paris, C., Ruzicka, J., Saul, S., . . . Zheng, Y. (2021). Ten years of modeling the Deepwater Horizon oil spill. Environmental Modelling & Software, 142, 105070. | |
| Technology, N. J. I. o., Boufadel, M., Bracco, A., Chassignet, E., Chen, S., D’Asaro, E., Dewar, W., Garcia-Pineda, O., Justić, D., Katz, J., Kourafalou, V., MacDonald, I., Özgökmen, T., Paris-Limouzy, C., Socolofsky, S., Halpern, D., & Shepherd, J. (2021). Physical Transport Processes that Affect the Distribution of Oil in the Gulf of Mexico: Observations and Modeling. Oceanography, 34(1), 58-75. | |
| Cui, L., Harris, C. K., & Tarpley, D. R. N. (2021). Formation of Oil-Particle-Aggregates: Numerical Model Formulation and Calibration. Frontiers in Marine Science, 8. | |
| Dukhovskoy, D. S., Morey, S. L., Chassignet, E. P., Chen, X., Coles, V. J., Cui, L., Harris, C. K., Hetland, R., Hsu, T., Manning, A. J., Stukel, M., Thyng, K., & Wang, J. (2021). Development of the CSOMIO Coupled Ocean-Oil-Sediment- Biology Model. Frontiers in Marine Science, 8. | |
| Ruiz Xomchuk, V., Hetland, R. D., & Qu, L. (2021). Small‐Scale Variability of Bottom Oxygen in the Northern Gulf of Mexico. Journal of Geophysical Research: Oceans, 126(1). | |
| Solo-Gabriele, H. M., Fiddaman, T., Mauritzen, C., Ainsworth, C., Abramson, D. M., Berenshtein, I., Chassignet, E. P., Chen, S. S., Conmy, R. N., Court, C. D., Dewar, W. K., Farrington, J. W., Feldman, M. G., Ferguson, A. C., Fetherston-Resch, E., French-McCay, D., Hale, C., He, R., Kourafalou, V. H., . . . Yoskowitz, D. (2021). Towards integrated modeling of the long-term impacts of oil spills. Marine Policy, 131, 104554. | |
| Thyng, K. M., Kobashi, D., Ruiz-Xomchuk, V., Qu, L., Chen, X., & Hetland, R. D. (2021). Performance of offline passive tracer advection in the Regional Ocean Modeling System (ROMS; v3.6, revision 904). Geoscientific Model Development, 14(1), 391-407. | |
| Ye, L., Manning, A. J., Holyoke, J., Penaloza-Giraldo, J. A., & Hsu, T. (2021). The Role of Biophysical Stickiness on Oil-Mineral Flocculation and Settling in Seawater. Frontiers in Marine Science, 8. | |
2020 |
| Barker, C. H., Kourafalou, V. H., Beegle-Krause, C., Boufadel, M., Bourassa, M. A., Buschang, S. G., Androulidakis, Y., Chassignet, E. P., Dagestad, K., Danmeier, D. G., Dissanayake, A. L., Galt, J. A., Jacobs, G., Marcotte, G., Özgökmen, T., Pinardi, N., Schiller, R. V., Socolofsky, S. A., Thrift-Viveros, D., . . . Zheng, Y. (2020). Progress in Operational Modeling in Support of Oil Spill Response. Journal of Marine Science and Engineering, 8(9), 668. | |
| Shropshire, T. A., Morey, S. L., Chassignet, E. P., Bozec, A., Coles, V. J., Landry, M. R., Swalethorp, R., Zapfe, G., & Stukel, M. R. (2020). Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical–biogeochemical model. Biogeosciences, 17(13), 3385-3407. | |
| Ye, L., Manning, A. J., & Hsu, T. (2020). Oil-mineral flocculation and settling velocity in saline water. Water Research, 173, 115569. | |
2019 |
| Thyng, K. M. (2019). Deepwater Horizon Oil could have naturally reached Texas beaches. Marine Pollution Bulletin, 149, 110527. | |
2018 |
| Ye, L., Manning, A. J., Hsu, T., Morey, S., Chassignet, E. P., & Ippolito, T. A. (2018). Novel Application of Laboratory Instrumentation Characterizes Mass Settling Dynamics of Oil-Mineral Aggregates (OMAs) and Oil-Mineral-Microbial Interactions. Marine Technology Society Journal, 52(6), 87-90. | |
2016 |
| Farrington, J., Burns, K., & Leinen, M. (2016). Synthesis and Crosscutting Topics of the GoMRI Special Issue. Oceanography, 29(3), 204-213. | |
Book Chapter - 1 |
2020 |
| Sunday Alademomi, A., J. Manning, A., J. Abbott, V., & J.S. Whitehouse, R. (2020). Morphodynamics in a Tropical Shallow Lagoon: Observation and Inferences of Change. In Lagoon Environments Around the World - A Scientific Perspective IntechOpen. | |
Conference Presentations - 57 |
2020 |
| Coles, V. W., J.; Mason, O. S., & M (2020). Understanding how trait-based modeling (Genome-based EmergeNt Ocean Microbial Ecosystem Model) influences predictions of biogeochemical, ecological, and microbial system responses. In Ocean Sciences Meeting 2020 | |
| Cui, L. H., & C.K.; Tarpley, D. (2020). Formation and fate of oil particle aggregates in the Gulf of Mexico continental shelf: Numerical modeling. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2020 | |
| Harris, C. C., & L.; Dukhovskoy, D. (2020). Oil particle aggregation model for the Gulf of Mexico continental shelf: Scenario testing. In Ocean Sciences Meeting 2020 | |
| Ippolito, T. C., & E.P (2020). Experiential Learning Activities for the Classroom: Lessons Learned Developing Standards-Aligned Science Curricula for Middle and High School Students. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2020 | |
| Laxenaire, R. D., D.S.; Morey, S. C., & E.P.; Chen, X. (2020). Lagrangian-Eulerian mapping in CSOMIO coupled ocean-oil-sediment-biology model. In Ocean Sciences Meeting 2020 | |
| Morey, S. C., E.P.; Dukhovskoy, D. H., C.K.; Coles, V. S., M.; Hetland, R. T., K.; Hsu, T. M., A.; Mason, O. Y., L.; Cui, L. C., & J.; Wang, J. (2020). A coupled modeling system for simulating oil-biological-sediment interactions in the ocean. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2020 | |
| Morey, S. C., E.P.; Dukhovskoy, D. H., C.K.; Coles, V. S., M.R.; Hetland, R. T., K.M.; Hsu, T. M., A.J.; Mason, O. X., V.R.; Kobashi, D. Q., L.; Ye, L. C., L.; Chen, X. W., & J (2020). A coupled modeling system for simulating oil-biological-sediment interactions in the ocean. In Ocean Sciences Meeting 2020 | |
| Shropshire, T. M., S.L.; Chassignet, E. C., V.; Karnauskas, M. L., M.R.; Lee, S. Z., & G.; Stukel, M. (2020). Zooplankton validation in a physical-biogeochemical model with potentially valuable applications to fisheries management in the Gulf of Mexico. In Ocean Sciences Meeting 2020 | |
| Thyng, K. X., V.R.; Kobashi, D. Q., L.; Hetland, R. D., D.; Morey, S. C., & X.; Chassignet, E. (2020). Offline Tracer Advection in a Realistic Regional Ocean Model. In Ocean Sciences Meeting 2020 | |
| Wang, J. C., V.; Stukel, M. M., & O (2020). Rapid adaptation of the microbial community to abrupt environmental change in the Gulf of Mexico modeled with the Genome-based EmergeNt Ocean Microbial Ecosystem Model. In Ocean Sciences Meeting 2020 | |
| Ye, L. M., & A.J.; Hsu, T. (2020). Oil-mineral flocculation and settling dynamics in saline water. In Ocean Sciences Meeting 2020 | |
2019 |
| Cui, L. H., & C.K.; Tarpley, D. (2019). Estimating the impact of oil on flocculation processes with a new parameterized sediment model. In Community Surface Dynamics Modeling System (CSDMS) Annual Meeting 2019 | |
| Cui, L. H., & C.K.; Tarpley, D. (2019). Estimating the impact of oil on flocculation processes with a new parameterized sediment model. In Gordon Research Conference on Advances in Coastal and Estuarine Physics from Nearshore to Continental-Margin Scales | |
| Cui, L. H., & C.K.; Tarpley, D. (2019). Development of an Oil Particle Aggregation Model for the Gulf of Mexico Continental Shelf. In 25th Biennial CERF Conference | |
| Diao, X. T., & K (2019). Defining the Mississippi river plume with numerical drifters. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Dukhovskoy, D. M., & S.L.; Chassignet, E. (2019). Lessons Learned from Deepwater Horizon: Uncertainties and Challenges in Numerical Simulations of the Oil Spill. In 2019 AGU Fall Meeting | |
| Gu, C. S., K.L.; Wheatland, J. B., A.J.; Manning, A. C., & S (2019). Beyond 2D: Stokesian Dynamics simulations of the settling dynamics of real river flocs from high-resolution 3D imaging data. In 2019 AGU Fall Meeting | |
| Harris, C. T., & D.R.; Friedrichs, C. (2019). Application and parameterization of a sediment flocculation model for OMA formation for a Gulf of Mexico continental shelf site. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Holyoke, J. Y., L.; Hsu, T. M., & A.J (2019). The Role of Texas Crude Oil in Mineral Flocculation Evolution: A Laboratory Investigation. In 2019 AGU Fall Meeting | |
| Howe, K. S., K.W.; Campbell, L. B., B.J.; Thrash, J. R., N.N.; Rogener, M. J., & S.B.; Mason, O. (2019). Gulf of Mexico hypoxic zone omics data elucidate active, non-canonical methanotrophs that have the potential to impact hydrocarbon fate in the coastal zone. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Kelly, T. L., & M.R.; Stukel, M. (2019). Pelagic Connectivity: The Flux and Composition of Sinking Material in the Oligotrophic GOM. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Kobashi, D. H., & R (2019). Variability of submesoscale frontal eddies on the Texas-Louisiana shelf. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Manning, A. Y., & L (2019). Flocculation Characteristics and Settling Dynamics of Suspended Cohesive Sediments: Floccin Across the USA. In 4th Symposium on Two-Phase Modelling for Sediment Dynamics in Geophysical Flows (THESIS-2019) | |
| Manning, A. W., V.; Gratiot, N. L., & C.; Michallet, H. (2019). The flocculation characteristics of freshly eroded aggregates. In 2019 AGU Fall Meeting | |
| Morey, S. C., E.; Dukhovskoy, D. S., M.; Harris, C. H., R.; Thyng, K. C., V.; Hsu, T. M., & A.; Mason, O. (2019). Development of a coupled modeling system for simulating oil-microbial-sediment interactions in the ocean. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Ruiz Xomchuk, V. H., & R (2019). Is bottom oxygen on the Texas-Louisiana shelf persistent?. In Gordon Research Conference on Coastal and Estuarine Dynamics Across Spatial Scales: Advances from Observational, Numerical and Theoretical Analyses | |
| Ruiz Xomchuk, V. H., & R (2019). Is bottom oxygen on the Texas-Louisiana shelf persistent?. In Gordon Research Conference on Advances in Coastal and Estuarine Physics from Nearshore to Continental-Margin Scales | |
| Ruiz Xomchuk, V. H., & R (2019). Using a Budget Analysis to Understand Variability in Modeled Bottom Hypoxia of the Texas Louisiana Shelf. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Stropshire, T. M., S.; Chassignet, E. C., V.; Karnauskas, M. L., M.; Lee, S. S., & M (2019). Estimates of food limitation experienced by coastal-pelagic fish larvae in the Gulf of Mexico. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Wang, J. C., V.; Kelly, T. M., O.U.; Stropshire, T. S., & M.R (2019). Oil-Microbe interactions in the Gulf of Mexico (GoM) modeled with the Genome-based EmergeNt Ocean Microbial Ecosystem Model. In ASLO 2019 Aquatic Sciences Meeting | |
| Wang, J. C., V.; Kelly, T. M., O.U.; Stropshire, T. S., & M.R (2019). Oil-Microbe interactions in the Gulf of Mexico (GoM) modeled with the Genome-based EmergeNt Ocean Microbial Ecosystem Model. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
| Wang, J. C., V.; Stukel, M. K., & T.; Mason, O. (2019). Rapid adaptation of the microbial community to abrupt environmental change in the Gulf of Mexico modeled with the Genome-based EmergeNt Oceand Microbial Ecosystem Model. In 2019 Ocean Carbon and Biogeochemistry (OCB) Summer Workshop | |
| Ye, L. H., J.; Manning, A. H., & T (2019). Oil-mineral flocculation and settling dynamics in saline water. In 4th Symposium on Two-Phase Modelling for Sediment Dynamics in Geophysical Flows (THESIS-2019) | |
| Ye, L. M., A.; Hsu, T. S., & M (2019). Settling dynamics of oil-mineral aggregates (OMAs) interations. In Gulf of Mexico Oil Spill & Ecosystem Science Conference 2019 | |
2018 |
| Chang, G. S., F.; Scheu, K. J., C.; Egan, G. C., M.; Monismith, S. F., & O.; Manning, A. (2018). Optics and acoustics for near-bed particle characterization and quantification of turbulence. In Ocean Optics XXIV Conference | |
| Coles, V. (2018). Is it who you are or what you do? Evolution of metabolic function shapes ocean biogeochemistry in a gene-based model. In 2018 Ocean Carbon and Biogeochemistry Summer Workshop | |
| Coles, V. S., M.; Moran, M. H., & R (2018). Metabolic function not microbial taxonomy determines ocean biogeochemical gradients in a gene based marine ecosystem model. In Ocean Sciences Meeting 2018 | |
| Deng, Z. H., Q.; Chassagne, C. M., & A.J (2018). Properties of sediment-algae flocs as function of shear and environmental conditions: a laboratory study. In 2018 AGU Fall Meeting | |
| Diao, X. T., & K (2018). Using statistics with drifter tracking to define a river plume. In 2018 Physics of Estuaries and Coastal Seas (PECS) Meeting | |
| Egan, G. C., M.; Spada, F. C., G.; Manning, A. F., & O.; Monismith, S. (2018). In situ observations of near-bed turbulence and cohesive sediment transport. In 2018 AGU Fall Meeting | |
| Holyoke, J. Y., L.; Hsu, T. M., & A.J (2018). An experimental investigation on the role of flow turbulence in oil-mineral-microbial interaction. In 2018 AGU Fall Meeting | |
| Howe, K. S., K.; Baker, B. T., J.; Campbell, L. R., M.; Joye, S. M., & O.U (2018). Revealing previously unrecognized microbes involved in methane oxidation along an oxygen gradient in the northern Gulf of Mexico. In 17th International Symposium on Microbial Ecology | |
| Livsey, D. D., M.D.; Manning, A. S., & D.H (2018). Effect of flocculation on estimated sediment flux derived from optical turbidity measurements in the San Francisco Estuary. In 2018 AGU Fall Meeting | |
| Manning, A. (2018). Changes in Water Temperature and the Effects on the Morphology of Muddy Coastal River-Deltas. In 2018 AGU Fall Meeting | |
| Mehta, A. H., & E.; Manning, A. (2018). Water temperature change and morphology of coastal river-deltas. Proceedings of the 10th International Conference on Climate Change: Impacts & Responses, Special Focus: Engaging with Policy on Climate Change. In 10th International Conference on Climate Change: Impacts & Responses | |
| Mehta, A. M., & A.J (2018). A Comparative Assessment of Cohesive Sediment Settling Velocities from Five Estuaries. In 5th International Association for Hydro-Environment Engineering and Research (IAHR) Europe Congress | |
| Mehta, A. M., W.H.; Samsami, F. M., & A.J (2018). Revisiting the role of aggregation in the settling of cohesive flocs in the marine environment. In 36th International Conference on Coastal Engineering | |
| Ruiz, V. H., & R (2018). Using a budget analysis to understand variability in the bottom hypoxia of the Texas Louisiana shelf. In 2018 Physics of Estuaries and Coastal Seas (PECS) Meeting | |
| Safar, Z. R., S.; Ibanez Sanz, M. C., C.; Manning, A. P., J.D.; Souza, A. v. K., T.; Horner-Devine, A. F., & R.; McKeon, M. (2018). In situ characterization and dynamics of Suspended Particulate Matter (SPM) in the Rhine river front during neap tide. In 2018 AGU Fall Meeting | |
| Shakeel, A. C., & C.; Manning, A. (2018). Rheo-optical analysis of natural sediments under continuous and oscillating shearing action. In 2018 AGU Fall Meeting | |
| Spencer, K. W., J.; Bushby, A. M., & A.J.; Carr, S. (2018). Can New Information on Suspended Sediment Floc Characteristics Improve Understanding of Cohesive Sediment Behaviour?. In 2018 AGU Fall Meeting | |
| Tarpley, D. H., & C.K.; Friedrichs, C. (2018). Tidal variation in sediment distribution in an idealized estuarine model in response to cohesive dynamics. In 15th Estuarine and Coastal Modeling Conference | |
| Ye, L. H., & T.-J.; Manning, A. (2018). Settling Dynamics of Oil-Mineral-Microbial Interactions: A Laboratory Study. In 2018 AGU Fall Meeting | |
| Yue, L. C., Z.; Hsu, T.-J.; Horner-Devine, A. M., & A.J (2018). A Turbulence-Resolving Numerical Investigation on the Transport Dynamics of Sand-Mud Mixture in Wave Bottom Boundary Layer. In 8th International Symposium on Environmental Hydraulics | |
| Yue, L. C., Z.; Hsu, T.-J.; Horner-Devine, A. M., & A.J (2018). Turbulence-resolving numerical simulation of fine sediment transport over bedforms. In 36th International Conference on Coastal Engineering | |
| Yue, L. H., T.-J.; Horner-Devine, A. M., & A.J.; Ogston, A. (2018). A Turbulence-resolving Numerical Investigation of Wave-supported Gravity Flow. In 2018 AGU Fall Meeting | |
| Zhang, N. T., C.E.L.; Townend, I. R., K.E.; Paterson, D. M., & A.J (2018). Investigating the internal structure of biofilm-sediment aggregates using X-ray micro-tomography. In 2018 AGU Fall Meeting | |
